Research workbench
AlphaFold monomer V2.0 prediction for lipopolysaccharide core galacturonosyltransferase rgtb (Q1MJ97)
Analyse AlphaFold monomer V2.0 prediction for lipopolysaccharide core… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q1MJ97
- Type
- protein
- Length
- 494 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x3BFd9938226F8990658D1862a21a8b24B008D0c8
- Molecule
- Lipopolysaccharide core galacturonosyltransferase rgtb
- UniProt
- Q1MJ97
- Pockets
- 5 · best druggability 0.66
Structure
1 distinct chain · 68% helix, 6% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lipopolysaccharide core galacturonosyltransferase rgtb | protein | 494 | 68% helix, 6% strand | Q1MJ97 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 394 | 0.66 | 0.79 | 45 | empty |
| 2 | 69 | 0.58 | 0.90 | 21 | empty |
| 3 | 83 | 0.48 | 0.82 | 20 | empty |
| 4 | 68 | 0.31 | 0.74 | 16 | empty |
| 5 | 53 | 0.28 | 0.73 | 11 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q1MJ97
- Elsewhere: UniProt Q1MJ97 · AlphaFold DB Q1MJ97
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