Research workbench
AlphaFold monomer V2.0 prediction for probable rhamnogalacturonate lyase B (A1D144)
Analyse AlphaFold monomer V2.0 prediction for probable rhamnogalacturonate lyase B… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- A1D144
- Type
- protein
- Length
- 658 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xa73BAb1DabE4333A884D03393eAa10c3B4215494
- Molecule
- Probable rhamnogalacturonate lyase B
- UniProt
- A1D144
- Pockets
- 7 · best druggability 0.81
Structure
1 distinct chain · 11% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable rhamnogalacturonate lyase B | protein | 658 | 11% helix, 43% strand | A1D144 |
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 582 | 0.81 | 0.87 | 57 | empty |
| 2 | 248 | 0.53 | 0.76 | 23 | empty |
| 3 | 186 | 0.50 | 0.77 | 29 | empty |
| 4 | 72 | 0.46 | 0.82 | 16 | empty |
| 5 | 180 | 0.45 | 0.75 | 37 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A1D144
- Elsewhere: UniProt A1D144 · AlphaFold DB A1D144
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