Research workbench
AlphaFold monomer V2.0 prediction for probable rhamnogalacturonate lyase B (B0XPA2)
Analyse AlphaFold monomer V2.0 prediction for probable rhamnogalacturonate lyase B… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- B0XPA2
- Type
- protein
- Length
- 658 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x5c4adF1416281C09AE8eE1cbb80fF7e44cE86F97
- Molecule
- Probable rhamnogalacturonate lyase B
- UniProt
- B0XPA2
- Pockets
- 5 · best druggability 0.83
Structure
1 distinct chain · 10% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable rhamnogalacturonate lyase B | protein | 658 | 10% helix, 43% strand | B0XPA2 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 650 | 0.83 | 0.88 | 53 | empty |
| 2 | 440 | 0.62 | 0.76 | 51 | empty |
| 3 | 209 | 0.50 | 0.76 | 36 | empty |
| 4 | 68 | 0.38 | 0.79 | 16 | empty |
| 5 | 70 | 0.29 | 0.74 | 16 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B0XPA2
- Elsewhere: UniProt B0XPA2 · AlphaFold DB B0XPA2
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