Research workbench
AlphaFold monomer V2.0 prediction for rhamnogalacturonate lyase a (Q5AX45)
Analyse AlphaFold monomer V2.0 prediction for rhamnogalacturonate lyase a (Q5AX45) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q5AX45
- Type
- protein
- Length
- 527 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x7782F4817b37743d738e9aF842bf74bd50f2015E
- Molecule
- Rhamnogalacturonate lyase a
- UniProt
- Q5AX45
- Pockets
- 3 · best druggability 0.53
Structure
1 distinct chain · 6% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Rhamnogalacturonate lyase a | protein | 527 | 6% helix, 43% strand | Q5AX45 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 194 | 0.53 | 0.78 | 33 | empty |
| 2 | 84 | 0.43 | 0.80 | 22 | empty |
| 3 | 53 | 0.27 | 0.74 | 17 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5AX45
- Elsewhere: UniProt Q5AX45 · AlphaFold DB Q5AX45
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