Research workbench
AlphaFold monomer V2.0 prediction for probable rhamnogalacturonate lyase a (Q0CVU1)
Analyse AlphaFold monomer V2.0 prediction for probable rhamnogalacturonate lyase a… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q0CVU1
- Type
- protein
- Length
- 531 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x5881B09f2D8e743400698633641fc1cD2Ed2BE6F
- Molecule
- Probable rhamnogalacturonate lyase a
- UniProt
- Q0CVU1
- Pockets
- 3 · best druggability 0.52
Structure
1 distinct chain · 7% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable rhamnogalacturonate lyase a | protein | 531 | 7% helix, 43% strand | Q0CVU1 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 227 | 0.52 | 0.76 | 30 | empty |
| 2 | 127 | 0.50 | 0.80 | 25 | empty |
| 3 | 74 | 0.32 | 0.75 | 18 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q0CVU1
- Elsewhere: UniProt Q0CVU1 · AlphaFold DB Q0CVU1
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