Research workbench
AlphaFold monomer V2.0 prediction for probable rhamnogalacturonate lyase a (B8NCU7)
Analyse AlphaFold monomer V2.0 prediction for probable rhamnogalacturonate lyase a… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- B8NCU7
- Type
- protein
- Length
- 528 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xf87a97E0A4bB354D834857B14296240B167cbe70
- Molecule
- Probable rhamnogalacturonate lyase a
- UniProt
- B8NCU7
- Pockets
- 4 · best druggability 0.52
Structure
1 distinct chain · 7% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable rhamnogalacturonate lyase a | protein | 528 | 7% helix, 43% strand | B8NCU7 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 186 | 0.52 | 0.78 | 32 | empty |
| 2 | 142 | 0.49 | 0.78 | 24 | empty |
| 3 | 107 | 0.40 | 0.76 | 20 | empty |
| 4 | 68 | 0.29 | 0.73 | 15 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B8NCU7
- Elsewhere: UniProt B8NCU7 · AlphaFold DB B8NCU7
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