Research workbench
AlphaFold monomer V2.0 prediction for probable rhamnogalacturonate lyase a (B0YEH9)
Analyse AlphaFold monomer V2.0 prediction for probable rhamnogalacturonate lyase a… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- B0YEH9
- Type
- protein
- Length
- 528 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xbff27Dc0a932A6E0d9Fe883AAbD1BF27bB95A69F
- Molecule
- Probable rhamnogalacturonate lyase a
- UniProt
- B0YEH9
- Pockets
- 3 · best druggability 0.56
Structure
1 distinct chain · 6% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable rhamnogalacturonate lyase a | protein | 528 | 6% helix, 43% strand | B0YEH9 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 247 | 0.56 | 0.78 | 35 | empty |
| 2 | 125 | 0.45 | 0.77 | 22 | empty |
| 3 | 66 | 0.32 | 0.76 | 17 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B0YEH9
- Elsewhere: UniProt B0YEH9 · AlphaFold DB B0YEH9
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