Research workbench
AlphaFold monomer V2.0 prediction for rhamnogalacturonate lyase a (Q00019)
Analyse AlphaFold monomer V2.0 prediction for rhamnogalacturonate lyase a (Q00019) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q00019
- Type
- protein
- Length
- 527 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x9e5E98E011361C5888c92e2CDb7652E02Bd5C7Ed
- Molecule
- Rhamnogalacturonate lyase a
- UniProt
- Q00019
- Pockets
- 4 · best druggability 0.53
Structure
1 distinct chain · 6% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Rhamnogalacturonate lyase a | protein | 527 | 6% helix, 43% strand | Q00019 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 192 | 0.53 | 0.78 | 30 | empty |
| 2 | 133 | 0.44 | 0.76 | 24 | empty |
| 3 | 51 | 0.27 | 0.75 | 17 | empty |
| 4 | 57 | 0.27 | 0.74 | 16 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 2XHN · Rhamnogalacturonan lyase from aspergillus aculeatus K150A active site mutant · an experimental structure of the same protein · chain A against A, TM-score 0.96
- 2XHN · Rhamnogalacturonan lyase from Aspergillus aculeatus K150A active site mutant · an experimental structure of the same protein · chain A against A, TM-score 0.96
- 3NJV · Rhamnogalacturonan lyase from aspergillus aculeatus K150A substrate complex · an experimental structure of the same protein · chain A against A, TM-score 0.96
- 3NJV · Rhamnogalacturonan lyase from Aspergillus aculeatus K150A substrate complex · an experimental structure of the same protein · chain A against A, TM-score 0.96
- 1NKG · Rhamnogalacturonan lyase from Aspergillus aculeatus · an experimental structure of the same protein · chain A against A, TM-score 0.96
- 1NKG · Rhamnogalacturonan lyase from aspergillus aculeatus · an experimental structure of the same protein · chain A against A, TM-score 0.96
- 3NJX · Rhamnogalacturonan Lyase from Aspergillus aculeatus mutant H210A · an experimental structure of the same protein · chain A against A, TM-score 0.96
- 3NJX · Rhamnogalacturonan lyase from aspergillus aculeatus mutant H210A · an experimental structure of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q00019
- Elsewhere: UniProt Q00019 · AlphaFold DB Q00019
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