Research workbench
AlphaFold monomer V2.0 prediction for GTP pyrophosphokinase (P0AG22)
Analyse AlphaFold monomer V2.0 prediction for GTP pyrophosphokinase (P0AG22) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P0AG22
- Type
- protein
- Length
- 744 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x6Ed09D80e98fE15DE51C9E7a8896AbF1f2365C3e
- Molecule
- GTP pyrophosphokinase
- UniProt
- P0AG22
- Pockets
- 12 · best druggability 0.70
Structure
1 distinct chain · 54% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | GTP pyrophosphokinase | protein | 744 | 54% helix, 16% strand | P0AG22 |
Pockets
12 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 466 | 0.70 | 0.80 | 52 | empty |
| 2 | 381 | 0.65 | 0.79 | 37 | empty |
| 3 | 187 | 0.53 | 0.78 | 28 | empty |
| 4 | 174 | 0.51 | 0.78 | 26 | empty |
| 5 | 140 | 0.45 | 0.76 | 28 | empty |
Compared structures
- 5L3P · Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome… · an experimental structure of the same protein · chain A against z, TM-score 0.38
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AG22
- Elsewhere: UniProt P0AG22 · AlphaFold DB P0AG22
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