Research workbench
AlphaFold monomer V2.0 prediction for RNA 3'-terminal phosphate cyclase-like protein (Q08096)
Analyse AlphaFold monomer V2.0 prediction for RNA 3'-terminal phosphate cyclase-like… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q08096
- Type
- protein
- Length
- 367 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x537a7697cdcd278751bf40d02a88e497634048D7
- Molecule
- RNA 3'-terminal phosphate cyclase-like protein
- UniProt
- Q08096
- Pockets
- 2 · best druggability 0.69
Structure
1 distinct chain · 31% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA 3'-terminal phosphate cyclase-like protein | protein | 367 | 31% helix, 28% strand | Q08096 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 501 | 0.69 | 0.80 | 43 | empty |
| 2 | 57 | 0.37 | 0.79 | 14 | empty |
Compared structures
- 7D5S · Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2) · an experimental structure of the same protein · chain A against RK, TM-score 0.97
- 6LQQ · Cryo-EM structure of 90S small subunit preribosomes in transition states (State B) · an experimental structure of the same protein · chain A against RK, TM-score 0.97
- 6LQU · Cryo-EM structure of 90S small subunit preribosomes in transition states (State A1) · an experimental structure of the same protein · chain A against RK, TM-score 0.97
- 6LQR · Cryo-EM structure of 90S small subunit preribosomes in transition states (State C) · an experimental structure of the same protein · chain A against RK, TM-score 0.97
- 6LQP · Cryo-EM structure of 90S small subunit preribosomes in transition states (State A) · an experimental structure of the same protein · chain A against RK, TM-score 0.97
- 6LQV · Cryo-EM structure of 90S small subunit preribosomes in transition states (State C1) · an experimental structure of the same protein · chain A against RK, TM-score 0.97
- 7D63 · Cryo-EM structure of 90S preribosome with inactive Utp24 (state C) · an experimental structure of the same protein · chain A against RK, TM-score 0.97
- 6KE6 · 3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome · an experimental structure of the same protein · chain A against RK, TM-score 0.97
- 5WLC · The complete structure of the small subunit processome · an experimental structure of the same protein · chain A against SH, TM-score 0.97
- 6ZQF · Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B… · an experimental structure of the same protein · chain A against CM, TM-score 0.97
- 6ZQG · Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-C · an experimental structure of the same protein · chain A against CM, TM-score 0.97
- 6ZQD · Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Post-A1 · an experimental structure of the same protein · chain A against CM, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q08096
- Elsewhere: UniProt Q08096 · AlphaFold DB Q08096
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