Research workbench
AlphaFold monomer V2.0 prediction for ribulose bisphosphate carboxylase small subunit, chloroplastic 1 (P00870)
Analyse AlphaFold monomer V2.0 prediction for ribulose bisphosphate carboxylase small… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P00870
- Type
- protein
- Length
- 123 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x71112d4fF7ebb3b617963c05f052289e073082FD
- Molecule
- Ribulose bisphosphate carboxylase small subunit, chloroplastic 1
- UniProt
- P00870
- Pockets
- 2 · best druggability 0.44
Structure
1 distinct chain · 21% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribulose bisphosphate carboxylase small subunit, chloroplastic 1 | protein | 123 | 21% helix, 24% strand | P00870 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 100 | 0.44 | 0.78 | 20 | empty |
| 2 | 78 | 0.39 | 0.78 | 14 | empty |
Compared structures
- 1RBO · Spinach rubisco in complex with the inhibitor 2-carboxyarabinitol-1,5-diphosphate · an experimental structure of the same protein · chain A against S, TM-score 0.98
- 1RBO · Spinach rubisco in complex with the inhibitor 2-carboxyarabinitol-1,5- diphosphate · an experimental structure of the same protein · chain A against S, TM-score 0.98
- 1RCO · Spinach rubisco in complex with the inhibitor D-xylulose-2, 2-diol-1,5-bisphosphate · an experimental structure of the same protein · chain A against S, TM-score 0.98
- 1RCO · Spinach rubisco in complex with the inhibitor D-xylulose-2,2-diol-1,5-bisphosphate · an experimental structure of the same protein · chain A against S, TM-score 0.98
- 8RUC · Activated spinach rubisco complexed with 2-carboxyarabinitol bisphosphate · an experimental structure of the same protein · chain A against J, TM-score 0.98
- 8RUC · Activated spinach rubisco complexed with 2-carboxyarabinitol bisphosphate · an experimental structure of the same protein · chain A against I, TM-score 0.98
- 1RCX · Non-activated spinach rubisco in complex with its substrate ribulose-1,5-bisphosphate · an experimental structure of the same protein · chain A against S, TM-score 0.98
- 1RCX · Non-activated spinach rubisco in complex with its substrate ribulose-1,5-bisphosphate · an experimental structure of the same protein · chain A against S, TM-score 0.98
- 1RXO · Activated spinach rubisco in complex with its substrate ribulose-1,5- bisphosphate and… · an experimental structure of the same protein · chain A against S, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00870
- Elsewhere: UniProt P00870 · AlphaFold DB P00870
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.