Research workbench
AlphaFold monomer V2.0 prediction for ribulose bisphosphate carboxylase (O58677)
Analyse AlphaFold monomer V2.0 prediction for ribulose bisphosphate carboxylase (O58677) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- O58677
- Type
- protein
- Length
- 430 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xBEb7EaCd930759b1c8b58cDFfac29530C219e051
- Molecule
- Ribulose bisphosphate carboxylase
- UniProt
- O58677
- Pockets
- 3 · best druggability 0.47
Structure
1 distinct chain · 43% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribulose bisphosphate carboxylase | protein | 430 | 43% helix, 18% strand | O58677 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 90 | 0.47 | 0.82 | 21 | empty |
| 2 | 118 | 0.44 | 0.78 | 23 | empty |
| 3 | 92 | 0.35 | 0.75 | 12 | empty |
Compared structures
- 2D69 · Crystal structure of the complex of sulfate ion and octameric ribulose-1,5-bisphosphate… · an experimental structure of the same protein · chain A against D, TM-score 0.95
- 2D69 · Crystal structure of the complex of sulfate ion and octameric ribulose-1,5-bisphosphate… · an experimental structure of the same protein · chain A against D, TM-score 0.95
- 2CWX · Crystal structure of octameric ribulose-1,5-bisphosphate CARBOXYLASE/OXYGENASE (rubisco)… · an experimental structure of the same protein · chain A against A, TM-score 0.94
- 2CWX · Crystal structure of octameric ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco)… · an experimental structure of the same protein · chain A against A, TM-score 0.94
- 2CXE · Crystal structure of octameric ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco)… · an experimental structure of the same protein · chain A against A, TM-score 0.94
- 2CXE · Crystal structure of octameric ribulose-1,5-bisphosphate CARBOXYLASE/OXYGENASE (rubisco)… · an experimental structure of the same protein · chain A against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O58677
- Elsewhere: UniProt O58677 · AlphaFold DB O58677
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