Research workbench
AlphaFold monomer V2.0 prediction for ribulose bisphosphate carboxylase large chain (P0C510)
Analyse AlphaFold monomer V2.0 prediction for ribulose bisphosphate carboxylase large… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P0C510
- Type
- protein
- Length
- 477 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xa73BAb1DabE4333A884D03393eAa10c3B4215494
- Molecule
- Ribulose bisphosphate carboxylase large chain
- UniProt
- P0C510
- Pockets
- 5 · best druggability 0.64
Structure
1 distinct chain · 42% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribulose bisphosphate carboxylase large chain | protein | 477 | 42% helix, 17% strand | P0C510 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 83 | 0.64 | 0.91 | 17 | empty |
| 2 | 157 | 0.50 | 0.78 | 29 | empty |
| 3 | 139 | 0.50 | 0.79 | 24 | empty |
| 4 | 110 | 0.35 | 0.73 | 22 | empty |
| 5 | 84 | 0.33 | 0.74 | 18 | empty |
Compared structures
- 6KYJ · Hybrid-rubisco (rice rbcl and sorghum rbcs) in complex with sulfate ions · an experimental structure of the same protein · chain A against E, TM-score 0.93
- 6KYJ · Hybrid-Rubisco (rice RbcL and sorghum RbcS) in complex with sulfate ions · an experimental structure of the same protein · chain A against E, TM-score 0.93
- 6KYI · Rice rubisco in complex with sulfate ions · an experimental structure of the same protein · chain A against B, TM-score 0.91
- 6KYI · Rice Rubisco in complex with sulfate ions · an experimental structure of the same protein · chain A against B, TM-score 0.91
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0C510
- Elsewhere: UniProt P0C510 · AlphaFold DB P0C510
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