Research workbench
AlphaFold monomer V2.0 prediction for ribulose bisphosphate carboxylase large chain (O85040)
Analyse AlphaFold monomer V2.0 prediction for ribulose bisphosphate carboxylase large… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- O85040
- Type
- protein
- Length
- 473 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x362a6d063b1B7E1B6EfD3A9A7CA3612e3FE037AA
- Molecule
- Ribulose bisphosphate carboxylase large chain
- UniProt
- O85040
- Pockets
- 4 · best druggability 0.59
Structure
1 distinct chain · 44% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribulose bisphosphate carboxylase large chain | protein | 473 | 44% helix, 18% strand | O85040 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 65 | 0.59 | 0.90 | 17 | empty |
| 2 | 211 | 0.56 | 0.79 | 29 | empty |
| 3 | 147 | 0.48 | 0.78 | 30 | empty |
| 4 | 173 | 0.45 | 0.75 | 30 | empty |
Compared structures
- 7SMK · H. neapolitanus carboxysomal rubisco/CsoSCA-peptide (1-50)complex · an experimental structure of the same protein · chain A against A, TM-score 0.95
- 7SNV · H. neapolitanus carboxysomal rubisco/CsoSCA-peptide (1-50)complex · an experimental structure of the same protein · chain A against A, TM-score 0.94
- 7ZBT · Subtomogram averaging of Rubisco from native Halothiobacillus carboxysomes · an experimental structure of the same protein · chain A against B, TM-score 0.92
- 7ZBT · Subtomogram averaging of rubisco from native halothiobacillus carboxysomes · an experimental structure of the same protein · chain A against A, TM-score 0.92
- 1SVD · The structure of halothiobacillus neapolitanus rubisco · an experimental structure of the same protein · chain A against A, TM-score 0.92
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O85040
- Elsewhere: UniProt O85040 · AlphaFold DB O85040
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