Research workbench
AlphaFold monomer V2.0 prediction for RNA polymerase-associated protein rapa (Q8ZII0)
Analyse AlphaFold monomer V2.0 prediction for RNA polymerase-associated protein rapa… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q8ZII0
- Type
- protein
- Length
- 968 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xF976194c67263Fe25C9A4fcAb3b5c3409a4Ed3E7
- Molecule
- RNA polymerase-associated protein rapa
- UniProt
- Q8ZII0
- Pockets
- 9 · best druggability 0.81
Structure
1 distinct chain · 47% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase-associated protein rapa | protein | 968 | 47% helix, 18% strand | Q8ZII0 |
Pockets
9 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 759 | 0.81 | 0.85 | 92 | empty |
| 2 | 1066 | 0.77 | 0.79 | 121 | empty |
| 3 | 210 | 0.56 | 0.79 | 22 | empty |
| 4 | 213 | 0.54 | 0.77 | 26 | empty |
| 5 | 62 | 0.51 | 0.86 | 17 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8ZII0
- Elsewhere: UniProt Q8ZII0 · AlphaFold DB Q8ZII0
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