Research workbench
AlphaFold monomer V2.0 prediction for RNA polymerase-associated protein rapa (Q87LD0)
Analyse AlphaFold monomer V2.0 prediction for RNA polymerase-associated protein rapa… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q87LD0
- Type
- protein
- Length
- 969 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x15040d7Bef412593c17C9A4149604C9C2A4788C7
- Molecule
- RNA polymerase-associated protein rapa
- UniProt
- Q87LD0
- Pockets
- 13 · best druggability 0.80
Structure
1 distinct chain · 47% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase-associated protein rapa | protein | 969 | 47% helix, 18% strand | Q87LD0 |
Pockets
13 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 987 | 0.80 | 0.81 | 119 | empty |
| 2 | 548 | 0.73 | 0.81 | 65 | empty |
| 3 | 55 | 0.65 | 0.95 | 14 | empty |
| 4 | 329 | 0.60 | 0.78 | 36 | empty |
| 5 | 381 | 0.56 | 0.74 | 52 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q87LD0
- Elsewhere: UniProt Q87LD0 · AlphaFold DB Q87LD0
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