Research workbench
AlphaFold monomer V2.0 prediction for RNA polymerase-associated protein rapa (Q3Z5V2)
Analyse AlphaFold monomer V2.0 prediction for RNA polymerase-associated protein rapa… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q3Z5V2
- Type
- protein
- Length
- 968 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x4d07E6a23DeB6B95bd9b90EcB67368b7e8D3B77e
- Molecule
- RNA polymerase-associated protein rapa
- UniProt
- Q3Z5V2
- Pockets
- 8 · best druggability 0.81
Structure
1 distinct chain · 47% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase-associated protein rapa | protein | 968 | 47% helix, 18% strand | Q3Z5V2 |
Pockets
8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1115 | 0.81 | 0.82 | 121 | empty |
| 2 | 994 | 0.79 | 0.81 | 106 | empty |
| 3 | 131 | 0.52 | 0.81 | 22 | empty |
| 4 | 161 | 0.48 | 0.77 | 26 | empty |
| 5 | 94 | 0.46 | 0.80 | 24 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q3Z5V2
- Elsewhere: UniProt Q3Z5V2 · AlphaFold DB Q3Z5V2
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