Research workbench
AlphaFold monomer V2.0 prediction for RNA polymerase-associated protein rapa (A0KSP4)
Analyse AlphaFold monomer V2.0 prediction for RNA polymerase-associated protein rapa… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- A0KSP4
- Type
- protein
- Length
- 968 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xbff27Dc0a932A6E0d9Fe883AAbD1BF27bB95A69F
- Molecule
- RNA polymerase-associated protein rapa
- UniProt
- A0KSP4
- Pockets
- 14 · best druggability 0.78
Structure
1 distinct chain · 47% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase-associated protein rapa | protein | 968 | 47% helix, 18% strand | A0KSP4 |
Pockets
14 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 648 | 0.78 | 0.84 | 72 | empty |
| 2 | 1148 | 0.78 | 0.80 | 90 | empty |
| 3 | 348 | 0.65 | 0.80 | 38 | empty |
| 4 | 231 | 0.58 | 0.79 | 29 | empty |
| 5 | 94 | 0.55 | 0.85 | 19 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0KSP4
- Elsewhere: UniProt A0KSP4 · AlphaFold DB A0KSP4
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