Research workbench
AlphaFold monomer V2.0 prediction for RNA polymerase-associated protein rapa (B8ECC6)
Analyse AlphaFold monomer V2.0 prediction for RNA polymerase-associated protein rapa… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- B8ECC6
- Type
- protein
- Length
- 968 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x6Ed09D80e98fE15DE51C9E7a8896AbF1f2365C3e
- Molecule
- RNA polymerase-associated protein rapa
- UniProt
- B8ECC6
- Pockets
- 15 · best druggability 0.74
Structure
1 distinct chain · 48% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase-associated protein rapa | protein | 968 | 48% helix, 18% strand | B8ECC6 |
Pockets
15 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 570 | 0.74 | 0.81 | 50 | empty |
| 2 | 507 | 0.65 | 0.77 | 52 | empty |
| 3 | 92 | 0.64 | 0.91 | 20 | empty |
| 4 | 255 | 0.60 | 0.80 | 28 | empty |
| 5 | 334 | 0.60 | 0.77 | 39 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B8ECC6
- Elsewhere: UniProt B8ECC6 · AlphaFold DB B8ECC6
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