Research workbench
AlphaFold monomer V2.0 prediction for RNA polymerase-associated protein rapa (C0Q5F4)
Analyse AlphaFold monomer V2.0 prediction for RNA polymerase-associated protein rapa… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- C0Q5F4
- Type
- protein
- Length
- 968 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x44D50E828c22812996CB99C7F2E0C5EC9933b478
- Molecule
- RNA polymerase-associated protein rapa
- UniProt
- C0Q5F4
- Pockets
- 14 · best druggability 0.82
Structure
1 distinct chain · 47% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase-associated protein rapa | protein | 968 | 47% helix, 18% strand | C0Q5F4 |
Pockets
14 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 472 | 0.82 | 0.90 | 65 | empty |
| 2 | 330 | 0.72 | 0.85 | 41 | empty |
| 3 | 193 | 0.59 | 0.82 | 24 | empty |
| 4 | 167 | 0.59 | 0.83 | 26 | empty |
| 5 | 106 | 0.52 | 0.82 | 25 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C0Q5F4
- Elsewhere: UniProt C0Q5F4 · AlphaFold DB C0Q5F4
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