Research workbench
AlphaFold monomer V2.0 prediction for RNA polymerase-associated protein rapa (B5F778)
Analyse AlphaFold monomer V2.0 prediction for RNA polymerase-associated protein rapa… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- B5F778
- Type
- protein
- Length
- 968 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xD3b8819A3F790D4BE519d2a8cD537B78d83834d4
- Molecule
- RNA polymerase-associated protein rapa
- UniProt
- B5F778
- Pockets
- 9 · best druggability 0.81
Structure
1 distinct chain · 47% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase-associated protein rapa | protein | 968 | 47% helix, 18% strand | B5F778 |
Pockets
9 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1059 | 0.81 | 0.82 | 112 | empty |
| 2 | 1175 | 0.77 | 0.79 | 110 | empty |
| 3 | 131 | 0.53 | 0.81 | 22 | empty |
| 4 | 142 | 0.42 | 0.75 | 23 | empty |
| 5 | 114 | 0.40 | 0.76 | 23 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B5F778
- Elsewhere: UniProt B5F778 · AlphaFold DB B5F778
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