Research workbench
AlphaFold monomer V2.0 prediction for RNA polymerase-associated protein rapa (A4VNR4)
Analyse AlphaFold monomer V2.0 prediction for RNA polymerase-associated protein rapa… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- A4VNR4
- Type
- protein
- Length
- 949 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xA1740d814B84975811C96baED2801952BAEf63bb
- Molecule
- RNA polymerase-associated protein rapa
- UniProt
- A4VNR4
- Pockets
- 9 · best druggability 0.84
Structure
1 distinct chain · 46% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase-associated protein rapa | protein | 949 | 46% helix, 19% strand | A4VNR4 |
Pockets
9 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 985 | 0.84 | 0.85 | 116 | empty |
| 2 | 771 | 0.80 | 0.83 | 101 | empty |
| 3 | 188 | 0.58 | 0.81 | 30 | empty |
| 4 | 102 | 0.50 | 0.81 | 26 | empty |
| 5 | 110 | 0.48 | 0.80 | 24 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A4VNR4
- Elsewhere: UniProt A4VNR4 · AlphaFold DB A4VNR4
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