Research workbench
AlphaFold monomer V2.0 prediction for RNA polymerase-associated protein rapa (Q88NR0)
Analyse AlphaFold monomer V2.0 prediction for RNA polymerase-associated protein rapa… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q88NR0
- Type
- protein
- Length
- 948 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x025f3b1a898b05AD2731bE6Ab72687b5920c4A3F
- Molecule
- RNA polymerase-associated protein rapa
- UniProt
- Q88NR0
- Pockets
- 10 · best druggability 0.80
Structure
1 distinct chain · 46% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase-associated protein rapa | protein | 948 | 46% helix, 19% strand | Q88NR0 |
Pockets
10 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 940 | 0.80 | 0.82 | 110 | empty |
| 2 | 641 | 0.79 | 0.84 | 59 | empty |
| 3 | 457 | 0.71 | 0.81 | 48 | empty |
| 4 | 161 | 0.67 | 0.88 | 31 | empty |
| 5 | 222 | 0.54 | 0.77 | 24 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q88NR0
- Elsewhere: UniProt Q88NR0 · AlphaFold DB Q88NR0
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