Research workbench
AlphaFold monomer V2.0 prediction for RNA polymerase-associated protein rapa (Q3KGV8)
Analyse AlphaFold monomer V2.0 prediction for RNA polymerase-associated protein rapa… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q3KGV8
- Type
- protein
- Length
- 948 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xF8cD1d8d93E9783063700De244A6e3cf6A195579
- Molecule
- RNA polymerase-associated protein rapa
- UniProt
- Q3KGV8
- Pockets
- 9 · best druggability 0.82
Structure
1 distinct chain · 46% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase-associated protein rapa | protein | 948 | 46% helix, 19% strand | Q3KGV8 |
Pockets
9 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 960 | 0.82 | 0.83 | 114 | empty |
| 2 | 768 | 0.77 | 0.81 | 64 | empty |
| 3 | 670 | 0.71 | 0.79 | 70 | empty |
| 4 | 446 | 0.71 | 0.82 | 56 | empty |
| 5 | 188 | 0.51 | 0.77 | 28 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q3KGV8
- Elsewhere: UniProt Q3KGV8 · AlphaFold DB Q3KGV8
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