Research workbench
AlphaFold monomer V2.0 prediction for RNA polymerase-associated protein rapa (A5VZN0)
Analyse AlphaFold monomer V2.0 prediction for RNA polymerase-associated protein rapa… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- A5VZN0
- Type
- protein
- Length
- 948 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xdF2b063d4B94F3f46D117B1af99A846bD4a59284
- Molecule
- RNA polymerase-associated protein rapa
- UniProt
- A5VZN0
- Pockets
- 10 · best druggability 0.81
Structure
1 distinct chain · 47% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase-associated protein rapa | protein | 948 | 47% helix, 18% strand | A5VZN0 |
Pockets
10 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1089 | 0.81 | 0.83 | 103 | empty |
| 2 | 1006 | 0.81 | 0.82 | 114 | empty |
| 3 | 474 | 0.71 | 0.81 | 54 | empty |
| 4 | 61 | 0.62 | 0.92 | 12 | empty |
| 5 | 96 | 0.41 | 0.78 | 24 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A5VZN0
- Elsewhere: UniProt A5VZN0 · AlphaFold DB A5VZN0
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