Research workbench
AlphaFold monomer V2.0 prediction for RNA polymerase-associated protein rapa (Q48LP5)
Analyse AlphaFold monomer V2.0 prediction for RNA polymerase-associated protein rapa… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q48LP5
- Type
- protein
- Length
- 948 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xd91633319BDB0a92cbC4f08DeA734Bf74C030064
- Molecule
- RNA polymerase-associated protein rapa
- UniProt
- Q48LP5
- Pockets
- 9 · best druggability 0.81
Structure
1 distinct chain · 47% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase-associated protein rapa | protein | 948 | 47% helix, 19% strand | Q48LP5 |
Pockets
9 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 992 | 0.81 | 0.82 | 89 | empty |
| 2 | 865 | 0.80 | 0.83 | 106 | empty |
| 3 | 504 | 0.70 | 0.80 | 63 | empty |
| 4 | 135 | 0.44 | 0.76 | 22 | empty |
| 5 | 162 | 0.43 | 0.74 | 29 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q48LP5
- Elsewhere: UniProt Q48LP5 · AlphaFold DB Q48LP5
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