Research workbench
AlphaFold monomer V2.0 prediction for RNA polymerase-associated protein rapa (Q6LV34)
Analyse AlphaFold monomer V2.0 prediction for RNA polymerase-associated protein rapa… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q6LV34
- Type
- protein
- Length
- 972 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xfb49cebc2B9f6316AdA524277f3b6b0257EF2335
- Molecule
- RNA polymerase-associated protein rapa
- UniProt
- Q6LV34
- Pockets
- 11 · best druggability 0.82
Structure
1 distinct chain · 47% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase-associated protein rapa | protein | 972 | 47% helix, 18% strand | Q6LV34 |
Pockets
11 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 841 | 0.82 | 0.84 | 96 | empty |
| 2 | 984 | 0.80 | 0.81 | 106 | empty |
| 3 | 203 | 0.61 | 0.82 | 28 | empty |
| 4 | 144 | 0.55 | 0.81 | 20 | empty |
| 5 | 68 | 0.44 | 0.81 | 20 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6LV34
- Elsewhere: UniProt Q6LV34 · AlphaFold DB Q6LV34
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