Research workbench
AlphaFold monomer V2.0 prediction for RNA polymerase-associated protein rapa (Q9CK01)
Analyse AlphaFold monomer V2.0 prediction for RNA polymerase-associated protein rapa… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9CK01
- Type
- protein
- Length
- 967 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xC3139F25753039810c47bBeCF44703fF28C29Fd6
- Molecule
- RNA polymerase-associated protein rapa
- UniProt
- Q9CK01
- Pockets
- 11 · best druggability 0.79
Structure
1 distinct chain · 47% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA polymerase-associated protein rapa | protein | 967 | 47% helix, 18% strand | Q9CK01 |
Pockets
11 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 756 | 0.79 | 0.83 | 79 | empty |
| 2 | 680 | 0.75 | 0.81 | 70 | empty |
| 3 | 529 | 0.70 | 0.80 | 51 | empty |
| 4 | 192 | 0.62 | 0.83 | 25 | empty |
| 5 | 341 | 0.58 | 0.76 | 31 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9CK01
- Elsewhere: UniProt Q9CK01 · AlphaFold DB Q9CK01
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