Research workbench
AlphaFold monomer V2.0 prediction for hth-type transcriptional regulator ramb (Q8NTD8)
Analyse AlphaFold monomer V2.0 prediction for hth-type transcriptional regulator ramb… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q8NTD8
- Type
- protein
- Length
- 474 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x80D2ac0F5e3268bC5C1d28BBAA07E3169BB02b79
- Molecule
- Hth-type transcriptional regulator ramb
- UniProt
- Q8NTD8
- Pockets
- 4 · best druggability 0.73
Structure
1 distinct chain · 48% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hth-type transcriptional regulator ramb | protein | 474 | 48% helix, 12% strand | Q8NTD8 |
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 443 | 0.73 | 0.83 | 46 | empty |
| 2 | 499 | 0.70 | 0.80 | 53 | empty |
| 3 | 625 | 0.66 | 0.76 | 63 | empty |
| 4 | 59 | 0.31 | 0.76 | 16 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8NTD8
- Elsewhere: UniProt Q8NTD8 · AlphaFold DB Q8NTD8
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