Research workbench
AlphaFold monomer V2.0 prediction for ribose 1,5-bisphosphate isomerase (Q5JFM9)
Analyse AlphaFold monomer V2.0 prediction for ribose 1,5-bisphosphate isomerase (Q5JFM9) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q5JFM9
- Type
- protein
- Length
- 322 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xa73BAb1DabE4333A884D03393eAa10c3B4215494
- Molecule
- Ribose 1,5-bisphosphate isomerase
- UniProt
- Q5JFM9
- Pockets
- 4 · best druggability 0.66
Structure
1 distinct chain · 53% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribose 1,5-bisphosphate isomerase | protein | 322 | 53% helix, 13% strand | Q5JFM9 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 189 | 0.66 | 0.85 | 36 | empty |
| 2 | 120 | 0.46 | 0.78 | 18 | empty |
| 3 | 50 | 0.37 | 0.80 | 14 | empty |
| 4 | 61 | 0.32 | 0.76 | 14 | empty |
Compared structures
- 3VM6 · Crystal structure of ribose-1,5-bisphosphate isomerase from thermococcus kodakarensis… · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 3VM6 · Crystal structure of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis… · an experimental structure of the same protein · chain A against A, TM-score 0.99
- 3A11 · Crystal structure of ribose-1,5-bisphosphate isomerase from Thermococcus kodakaraensis… · an experimental structure of the same protein · chain A against A, TM-score 0.81
- 3A11 · Crystal structure of ribose-1,5-bisphosphate isomerase from thermococcus kodakaraensis… · an experimental structure of the same protein · chain A against A, TM-score 0.81
- 3A9C · Crystal structure of ribose-1,5-bisphosphate isomerase from thermococcus kodakaraensis… · an experimental structure of the same protein · chain A against A, TM-score 0.81
- 3A9C · Crystal structure of ribose-1,5-bisphosphate isomerase from Thermococcus kodakaraensis… · an experimental structure of the same protein · chain A against A, TM-score 0.81
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5JFM9
- Elsewhere: UniProt Q5JFM9 · AlphaFold DB Q5JFM9
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