Research workbench
AlphaFold monomer V2.0 prediction for sensor protein qsec (P40719)
Analyse AlphaFold monomer V2.0 prediction for sensor protein qsec (P40719) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P40719
- Type
- protein
- Length
- 449 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x8af20c751cd561e3F0B6141F3317c17894026A1c
- Molecule
- Sensor protein qsec
- UniProt
- P40719
- Pockets
- 4 · best druggability 0.69
Structure
1 distinct chain · 54% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sensor protein qsec | protein | 449 | 54% helix, 15% strand | P40719 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 309 | 0.69 | 0.83 | 44 | empty |
| 2 | 88 | 0.35 | 0.74 | 17 | empty |
| 3 | 52 | 0.29 | 0.75 | 11 | empty |
| 4 | 64 | 0.27 | 0.72 | 11 | empty |
Compared structures
- 3JZ3 · Structure of the cytoplasmic segment of histidine kinase qsec · an experimental structure of the same protein · chain A against B, TM-score 0.31
- 3JZ3 · Structure of the cytoplasmic segment of histidine kinase QseC · an experimental structure of the same protein · chain A against B, TM-score 0.31
- 2KSE · Backbone structure of the membrane domain of E. coli histidine kinase receptor QseC… · an experimental structure of the same protein · chain A against A, TM-score 0.12
- 2KSE · Backbone structure of the membrane domain of E. COLI histidine kinase receptor qsec… · an experimental structure of the same protein · chain A against A, TM-score 0.12
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P40719
- Elsewhere: UniProt P40719 · AlphaFold DB P40719
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