Research workbench
AlphaFold monomer V2.0 prediction for quercetin 2,3-dioxygenase (P42106)
Analyse AlphaFold monomer V2.0 prediction for quercetin 2,3-dioxygenase (P42106) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P42106
- Type
- protein
- Length
- 337 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xd9599200c0c61D191Ad7Ca2b41cf6c2bB244b405
- Molecule
- Quercetin 2,3-dioxygenase
- UniProt
- P42106
- Pockets
- 3 · best druggability 0.69
Structure
1 distinct chain · 12% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Quercetin 2,3-dioxygenase | protein | 337 | 12% helix, 41% strand | P42106 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 167 | 0.69 | 0.87 | 34 | empty |
| 2 | 83 | 0.47 | 0.82 | 25 | empty |
| 3 | 56 | 0.34 | 0.78 | 13 | empty |
Compared structures
- 2H0V · Crystal structure of a putative quercetin 2,3-dioxygenase (yxag, bsu39980) from bacillus… · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 2H0V · Crystal structure of a putative quercetin 2,3-dioxygenase (yxag, BSU39980) from bacillus… · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 1Y3T · Crystal structure of yxag, a dioxygenase from bacillus subtilis · an experimental structure of the same protein · chain A against A, TM-score 0.97
- 1Y3T · Crystal structure of YxaG, a dioxygenase from Bacillus subtilis · an experimental structure of the same protein · chain A against A, TM-score 0.97
- 8HFB · Evolved variant of quercetin 2,4-dioxygenase from Bacillus subtilis · an experimental structure of the same protein · chain A against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P42106
- Elsewhere: UniProt P42106 · AlphaFold DB P42106
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