Research workbench
AlphaFold monomer V2.0 prediction for phycobilisome rod-core linker polypeptide cpcg (Q05238)
Analyse AlphaFold monomer V2.0 prediction for phycobilisome rod-core linker polypeptide… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q05238
- Type
- protein
- Length
- 248 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xBE81563aE073ce9CCBbFCd4eb1F3935F14a0001F
- Molecule
- Phycobilisome rod-core linker polypeptide cpcg
- UniProt
- Q05238
- Pockets
- 2 · best druggability 0.60
Structure
1 distinct chain · 48% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phycobilisome rod-core linker polypeptide cpcg | protein | 248 | 48% helix, 1% strand | Q05238 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 354 | 0.60 | 0.77 | 38 | empty |
| 2 | 60 | 0.39 | 0.80 | 14 | empty |
Compared structures
- 7EXT · Cryo-EM structure of cyanobacterial phycobilisome from Synechococcus sp. PCC 7002 · an experimental structure of the same protein · chain A against A5, TM-score 0.79
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q05238
- Elsewhere: UniProt Q05238 · AlphaFold DB Q05238
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