Research workbench
AlphaFold monomer V2.0 prediction for acyl-homoserine lactone acylase pvdq (Q4KCM5)
Analyse AlphaFold monomer V2.0 prediction for acyl-homoserine lactone acylase pvdq… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q4KCM5
- Type
- protein
- Length
- 777 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x028515Ca84017068CF074628B04aDe18e16adfD8
- Molecule
- Acyl-homoserine lactone acylase pvdq
- UniProt
- Q4KCM5
- Pockets
- 7 · best druggability 0.74
Structure
1 distinct chain · 36% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Acyl-homoserine lactone acylase pvdq | protein | 777 | 36% helix, 24% strand | Q4KCM5 |
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1027 | 0.74 | 0.77 | 92 | empty |
| 2 | 227 | 0.70 | 0.87 | 32 | empty |
| 3 | 165 | 0.54 | 0.80 | 22 | empty |
| 4 | 151 | 0.43 | 0.75 | 29 | empty |
| 5 | 111 | 0.36 | 0.74 | 17 | empty |
Modifications
Observed in the structure: 3 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q4KCM5
- Elsewhere: UniProt Q4KCM5 · AlphaFold DB Q4KCM5
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