Research workbench
AlphaFold monomer V2.0 prediction for peptidyl-tRNA hydrolase (Q5SHZ2)
Analyse AlphaFold monomer V2.0 prediction for peptidyl-tRNA hydrolase (Q5SHZ2) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q5SHZ2
- Type
- protein
- Length
- 183 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xdF2b063d4B94F3f46D117B1af99A846bD4a59284
- Molecule
- Peptidyl-tRNA hydrolase
- UniProt
- Q5SHZ2
- Pockets
- 1 · best druggability 0.41
Structure
1 distinct chain · 46% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peptidyl-tRNA hydrolase | protein | 183 | 46% helix, 23% strand | Q5SHZ2 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 103 | 0.41 | 0.77 | 22 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 8X5T · Crystal structure of Thermus thermophilus peptidyl-tRNA hydrolase in complex with… · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 5ZX8 · Crystal structure of peptidyl-tRNA hydrolase from thermus thermophilus · an experimental structure of the same protein · chain A against A, TM-score 0.97
- 5ZX8 · Crystal structure of peptidyl-tRNA hydrolase from Thermus thermophilus · an experimental structure of the same protein · chain A against A, TM-score 0.97
- 8X5U · Crystal structure of Thermus thermophilus peptidyl-tRNA hydrolase C-terminal 16 amino… · an experimental structure of the same protein · chain A against A, TM-score 0.89
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5SHZ2
- Elsewhere: UniProt Q5SHZ2 · AlphaFold DB Q5SHZ2
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