Research workbench
AlphaFold monomer V2.0 prediction for pentatricopeptide repeat domain-containing protein 3, mitochondrial (Q14C51)
Analyse AlphaFold monomer V2.0 prediction for pentatricopeptide repeat… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q14C51
- Type
- protein
- Length
- 685 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x80D2ac0F5e3268bC5C1d28BBAA07E3169BB02b79
- Molecule
- Pentatricopeptide repeat domain-containing protein 3, mitochondrial
- UniProt
- Q14C51
- Pockets
- 9 · best druggability 0.58
Structure
1 distinct chain · 59% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pentatricopeptide repeat domain-containing protein 3, mitochondrial | protein | 685 | 59% helix, 0% strand | Q14C51 |
Pockets
9 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 416 | 0.58 | 0.75 | 30 | empty |
| 2 | 236 | 0.49 | 0.74 | 23 | empty |
| 3 | 95 | 0.46 | 0.80 | 22 | empty |
| 4 | 78 | 0.36 | 0.76 | 10 | empty |
| 5 | 60 | 0.31 | 0.74 | 12 | empty |
Compared structures
- 7PNT · Assembly intermediate of mouse mitochondrial ribosome small subunit without mS37 in… · an experimental structure of the same protein · chain A against 4, TM-score 0.84
- 7PNU · Assembly intermediate of mouse mitochondrial ribosome small subunit without mS37 in… · an experimental structure of the same protein · chain A against 4, TM-score 0.84
- 7PNV · Assembly intermediate of mouse mitochondrial ribosome small subunit without mS37 in… · an experimental structure of the same protein · chain A against 4, TM-score 0.84
- 7PNW · Mouse mitochondrial ribosome small subunit lacking m5U modification · an experimental structure of the same protein · chain A against 4, TM-score 0.84
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q14C51
- Elsewhere: UniProt Q14C51 · AlphaFold DB Q14C51
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