Research workbench
AlphaFold monomer V2.0 prediction for DNA replication complex gins protein PSF2 (P40359)
Analyse AlphaFold monomer V2.0 prediction for DNA replication complex gins protein PSF2… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P40359
- Type
- protein
- Length
- 213 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xF8cD1d8d93E9783063700De244A6e3cf6A195579
- Molecule
- DNA replication complex gins protein PSF2
- UniProt
- P40359
- Pockets
- 4 · best druggability 0.39
Structure
1 distinct chain · 53% helix, 6% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA replication complex gins protein PSF2 | protein | 213 | 53% helix, 6% strand | P40359 |
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 101 | 0.39 | 0.76 | 16 | empty |
| 2 | 110 | 0.37 | 0.73 | 19 | empty |
| 3 | 61 | 0.32 | 0.75 | 14 | empty |
| 4 | 51 | 0.31 | 0.76 | 15 | empty |
Compared structures
- 8KG6 · Yeast replisome in state I · an experimental structure of the same protein · chain A against B, TM-score 0.87
- 8KG8 · Yeast replisome in state II · an experimental structure of the same protein · chain A against B, TM-score 0.87
- 8W7M · Yeast replisome in state V · an experimental structure of the same protein · chain A against B, TM-score 0.87
- 8KG9 · Yeast replisome in state III · an experimental structure of the same protein · chain A against B, TM-score 0.87
- 8W7S · Yeast replisome in state IV · an experimental structure of the same protein · chain A against B, TM-score 0.87
- 6SKL · Cryo-EM structure of the CMG Fork Protection Complex at a replication fork - Conformation… · an experimental structure of the same protein · chain A against B, TM-score 0.87
- 7PMN · S. cerevisiae replisome-SCF(Dia2) complex bound to double-stranded DNA (conformation II) · an experimental structure of the same protein · chain A against B, TM-score 0.86
- 8P62 · S. cerevisiae ssDNA-sCMGE after DNA replication initiation · an experimental structure of the same protein · chain A against I, TM-score 0.85
- 8P63 · S. cerevisiae consensus-sCMGE on ssDNA after DNA replication initiation · an experimental structure of the same protein · chain A against I, TM-score 0.85
- 8P5E · S. cerevisiae nexus-sCMGE after DNA replication initiation · an experimental structure of the same protein · chain A against I, TM-score 0.85
- 8B9C · S. cerevisiae pol alpha - replisome complex · an experimental structure of the same protein · chain A against D, TM-score 0.85
- 8B9B · S. cerevisiae replisome + Ctf4, bound by pol alpha. Complex engaged with a fork DNA… · an experimental structure of the same protein · chain A against D, TM-score 0.85
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P40359
- Elsewhere: UniProt P40359 · AlphaFold DB P40359
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