Research workbench
AlphaFold monomer V2.0 prediction for phosphatidylserine decarboxylase proenzyme 2 (Q5JN42)
Analyse AlphaFold monomer V2.0 prediction for phosphatidylserine decarboxylase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q5JN42
- Type
- protein
- Length
- 624 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xd1A2963012bEcbC7A8f505464439Ab678C48936f
- Molecule
- Phosphatidylserine decarboxylase proenzyme 2
- UniProt
- Q5JN42
- Pockets
- 7 · best druggability 0.79
Structure
1 distinct chain · 33% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphatidylserine decarboxylase proenzyme 2 | protein | 624 | 33% helix, 24% strand | Q5JN42 |
Pockets
7 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1041 | 0.79 | 0.80 | 71 | empty |
| 2 | 603 | 0.69 | 0.78 | 62 | empty |
| 3 | 618 | 0.68 | 0.77 | 55 | empty |
| 4 | 340 | 0.67 | 0.81 | 36 | empty |
| 5 | 66 | 0.61 | 0.91 | 21 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5JN42
- Elsewhere: UniProt Q5JN42 · AlphaFold DB Q5JN42
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