Research workbench
AlphaFold monomer V2.0 prediction for photosystem II D2 protein (A0T0T0)
Analyse AlphaFold monomer V2.0 prediction for photosystem II D2 protein (A0T0T0) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- A0T0T0
- Type
- protein
- Length
- 351 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xcC2164F49676A5b2588352FcF2ec3621B2f73D12
- Molecule
- Photosystem II D2 protein
- UniProt
- A0T0T0
- Pockets
- 3 · best druggability 0.56
Structure
1 distinct chain · 64% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Photosystem II D2 protein | protein | 351 | 64% helix, 2% strand | A0T0T0 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 109 | 0.56 | 0.83 | 18 | empty |
| 2 | 277 | 0.51 | 0.74 | 39 | empty |
| 3 | 105 | 0.45 | 0.78 | 22 | empty |
Compared structures
- 8IWH · Structure and characteristics of a photosystem II supercomplex containing monomeric LHCX… · an experimental structure of the same protein · chain A against d, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0T0T0
- Elsewhere: UniProt A0T0T0 · AlphaFold DB A0T0T0
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