Research workbench
AlphaFold monomer V2.0 prediction for photosystem II protein D1 1 (P0A444)
Analyse AlphaFold monomer V2.0 prediction for photosystem II protein D1 1 (P0A444) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P0A444
- Type
- protein
- Length
- 360 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x3a312d9A90f3bb89BFC42BF4b95c23D7295582F9
- Molecule
- Photosystem II protein D1 1
- UniProt
- P0A444
- Pockets
- 5 · best druggability 0.69
Structure
1 distinct chain · 58% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Photosystem II protein D1 1 | protein | 360 | 58% helix, 3% strand | P0A444 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 528 | 0.69 | 0.79 | 60 | empty |
| 2 | 96 | 0.62 | 0.88 | 18 | empty |
| 3 | 168 | 0.46 | 0.75 | 20 | empty |
| 4 | 50 | 0.27 | 0.73 | 14 | empty |
| 5 | 62 | 0.27 | 0.73 | 14 | empty |
Compared structures
- 4TNI · Rt xfel structure of photosystem II 500 ms after the third illumination at 4.6 a… · an experimental structure of the same protein · chain A against A, TM-score 0.93
- 4TNI · RT XFEL structure of Photosystem II 500 ms after the third illumination at 4.6 A… · an experimental structure of the same protein · chain A against A, TM-score 0.93
- 4TNH · RT XFEL structure of Photosystem II in the dark state at 4.9 A resolution · an experimental structure of the same protein · chain A against A, TM-score 0.93
- 4TNH · Rt xfel structure of photosystem II in the dark state at 4.9 a resolution · an experimental structure of the same protein · chain A against A, TM-score 0.93
- 4IXR · Rt fs X-ray diffraction of photosystem II, first illuminated state · an experimental structure of the same protein · chain A against A, TM-score 0.93
- 4IXR · RT fs X-ray diffraction of Photosystem II, first illuminated state · an experimental structure of the same protein · chain A against A, TM-score 0.93
- 4TNJ · Rt xfel structure of photosystem II 500 ms after the 2ND illumination (2F) at 4.5 a… · an experimental structure of the same protein · chain A against A, TM-score 0.93
- 4TNJ · RT XFEL structure of Photosystem II 500 ms after the 2nd illumination (2F) at 4.5 A… · an experimental structure of the same protein · chain A against A, TM-score 0.93
- 4TNK · RT XFEL structure of Photosystem II 250 microsec after the third illumination at 5.2 A… · an experimental structure of the same protein · chain A against A, TM-score 0.93
- 4TNK · Rt xfel structure of photosystem II 250 microsec after the third illumination at 5.2 a… · an experimental structure of the same protein · chain A against A, TM-score 0.93
- 4IXQ · Rt fs X-ray diffraction of photosystem II, dark state · an experimental structure of the same protein · chain A against A, TM-score 0.93
- 4IXQ · RT fs X-ray diffraction of Photosystem II, dark state · an experimental structure of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A444
- Elsewhere: UniProt P0A444 · AlphaFold DB P0A444
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