Research workbench
AlphaFold monomer V2.0 prediction for photosystem I P700 chlorophyll a apoprotein A2 (P56767)
Analyse AlphaFold monomer V2.0 prediction for photosystem I P700 chlorophyll a… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P56767
- Type
- protein
- Length
- 734 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x5881B09f2D8e743400698633641fc1cD2Ed2BE6F
- Molecule
- Photosystem I P700 chlorophyll a apoprotein A2
- UniProt
- P56767
- Pockets
- 8 · best druggability 0.73
Structure
1 distinct chain · 61% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Photosystem I P700 chlorophyll a apoprotein A2 | protein | 734 | 61% helix, 3% strand | P56767 |
Pockets
8 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1104 | 0.73 | 0.76 | 114 | empty |
| 2 | 737 | 0.67 | 0.75 | 57 | empty |
| 3 | 385 | 0.64 | 0.78 | 45 | empty |
| 4 | 253 | 0.55 | 0.76 | 29 | empty |
| 5 | 180 | 0.51 | 0.77 | 21 | empty |
Compared structures
- 7WG5 · Cyclic electron transport supercomplex NDH-PSI from Arabidopsis · an experimental structure of the same protein · chain A against AB, TM-score 0.99
- 7WFD · Left PSI in the cyclic electron transport supercomplex NDH-PSI from Arabidopsis · an experimental structure of the same protein · chain A against AB, TM-score 0.99
- 7WFE · Right PSI in the cyclic electron transfer supercomplex NDH-PSI from Arabidopsis · an experimental structure of the same protein · chain A against BB, TM-score 0.99
- 8J6Z · Cryo-EM structure of the Arabidopsis thaliana photosystem I(PSI-LHCII-ST2) · an experimental structure of the same protein · chain A against B, TM-score 0.99
- 8J7B · Coordinates of Cryo-EM structure of the Arabidopsis thaliana PSI in state 2 (PSI-ST2) · an experimental structure of the same protein · chain A against B, TM-score 0.99
- 8J7A · Coordinates of Cryo-EM structure of the Arabidopsis thaliana PSI in state 1 (PSI-ST1) · an experimental structure of the same protein · chain A against B, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P56767
- Elsewhere: UniProt P56767 · AlphaFold DB P56767
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