Research workbench
AlphaFold monomer V2.0 prediction for photosystem I P700 chlorophyll a apoprotein A1 (P25936)
Analyse AlphaFold monomer V2.0 prediction for photosystem I P700 chlorophyll a… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P25936
- Type
- protein
- Length
- 755 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x79a905d858Ce72991FD6E7a9C6498620f42E146D
- Molecule
- Photosystem I P700 chlorophyll a apoprotein A1
- UniProt
- P25936
- Pockets
- 11 · best druggability 0.69
Structure
1 distinct chain · 60% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Photosystem I P700 chlorophyll a apoprotein A1 | protein | 755 | 60% helix, 5% strand | P25936 |
Pockets
11 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 807 | 0.69 | 0.75 | 72 | empty |
| 2 | 350 | 0.64 | 0.79 | 39 | empty |
| 3 | 263 | 0.56 | 0.76 | 28 | empty |
| 4 | 278 | 0.55 | 0.75 | 26 | empty |
| 5 | 313 | 0.55 | 0.75 | 33 | empty |
Compared structures
- 6K33 · Structure of PSI-isiA supercomplex from Thermosynechococcus vulcanus · an experimental structure of the same protein · chain A against aA, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P25936
- Elsewhere: UniProt P25936 · AlphaFold DB P25936
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