Research workbench
AlphaFold monomer V2.0 prediction for photosystem I P700 chlorophyll a apoprotein A1 (P0A405)
Analyse AlphaFold monomer V2.0 prediction for photosystem I P700 chlorophyll a… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P0A405
- Type
- protein
- Length
- 755 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x2860EAad4912B1169fF25F4532Ce490B282C1755
- Molecule
- Photosystem I P700 chlorophyll a apoprotein A1
- UniProt
- P0A405
- Pockets
- 11 · best druggability 0.69
Structure
1 distinct chain · 60% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Photosystem I P700 chlorophyll a apoprotein A1 | protein | 755 | 60% helix, 5% strand | P0A405 |
Pockets
11 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 647 | 0.69 | 0.77 | 66 | empty |
| 2 | 794 | 0.68 | 0.75 | 74 | empty |
| 3 | 273 | 0.57 | 0.76 | 27 | empty |
| 4 | 329 | 0.56 | 0.75 | 36 | empty |
| 5 | 298 | 0.56 | 0.76 | 43 | empty |
Compared structures
- 6TRA · Cryo- EM structure of the Thermosynechococcus elongatus photosystem I in the presence of… · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 6TRA · Cryo- EM structure of the thermosynechococcus elongatus photosystem I in the presence of… · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 6TRD · Cryo- EM structure of the Thermosynechococcus elongatus photosystem I in the presence of… · an experimental structure of the same protein · chain A against 1, TM-score 0.98
- 6TRD · Cryo- EM structure of the thermosynechococcus elongatus photosystem I in the presence of… · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 6TRC · Cryo- EM structure of the Thermosynechococcus elongatus photosystem I in the presence of… · an experimental structure of the same protein · chain A against a, TM-score 0.98
- 6TRC · Cryo- EM structure of the thermosynechococcus elongatus photosystem I in the presence of… · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 7FIX · Cryo-EM structure of cyanobacterial photosystem I in the presence of ferredoxin and… · an experimental structure of the same protein · chain A against A3, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A405
- Elsewhere: UniProt P0A405 · AlphaFold DB P0A405
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