Research workbench
AlphaFold monomer V2.0 prediction for photosystem I P700 chlorophyll a apoprotein A1 (P05310)
Analyse AlphaFold monomer V2.0 prediction for photosystem I P700 chlorophyll a… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P05310
- Type
- protein
- Length
- 758 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xF50a6eF515aB40F7071cB2E9F5e6410c6BD08d86
- Molecule
- Photosystem I P700 chlorophyll a apoprotein A1
- UniProt
- P05310
- Pockets
- 11 · best druggability 0.69
Structure
1 distinct chain · 59% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Photosystem I P700 chlorophyll a apoprotein A1 | protein | 758 | 59% helix, 5% strand | P05310 |
Pockets
11 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 824 | 0.69 | 0.75 | 75 | empty |
| 2 | 592 | 0.68 | 0.77 | 55 | empty |
| 3 | 296 | 0.59 | 0.77 | 40 | empty |
| 4 | 368 | 0.57 | 0.74 | 42 | empty |
| 5 | 265 | 0.56 | 0.76 | 28 | empty |
Compared structures
- 5L8R · The structure of plant photosystem I super-complex at 2.6 angstrom resolution. · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 5L8R · The structure of plant photosystem I super-complex at 2.6 ångström resolution. · an experimental structure of the same protein · chain A against A, TM-score 0.98
- 4Y28 · The structure of plant photosystem I super-complex at 2.8 ångström resolution. · an experimental structure of the same protein · chain A against A, TM-score 0.97
- 4Y28 · The structure of plant photosystem I super-complex at 2.8 angstrom resolution. · an experimental structure of the same protein · chain A against A, TM-score 0.97
- 4RKU · Crystal structure of plant photosystem I at 3 ångström resolution · an experimental structure of the same protein · chain A against A, TM-score 0.95
- 4RKU · Crystal structure of plant Photosystem I at 3 Angstrom resolution · an experimental structure of the same protein · chain A against A, TM-score 0.95
- 2O01 · The Structure of a plant photosystem I supercomplex at 3.4 Angstrom resolution · an experimental structure of the same protein · chain A against A, TM-score 0.93
- 2O01 · The structure of a plant photosystem I supercomplex at 3.4 ångström resolution · an experimental structure of the same protein · chain A against A, TM-score 0.93
- 2WSF · Improved model of plant photosystem I · an experimental structure of the same protein · chain A against A, TM-score 0.92
- 2WSF · Improved Model of Plant Photosystem I · an experimental structure of the same protein · chain A against A, TM-score 0.92
- 3LW5 · Improved model of plant photosystem I · an experimental structure of the same protein · chain A against A, TM-score 0.92
- 3LW5 · Improved model of plant photosystem I · an experimental structure of the same protein · chain A against A, TM-score 0.92
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P05310
- Elsewhere: UniProt P05310 · AlphaFold DB P05310
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