Research workbench
AlphaFold monomer V2.0 prediction for pre-mRNA-processing ATP- dependent RNA helicase PRP5 (Q4PFD9)
Analyse AlphaFold monomer V2.0 prediction for pre-mRNA-processing ATP- dependent RNA… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q4PFD9
- Type
- protein
- Length
- 1,156 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x0A8D4a5B4828846390525641fD0a4311Eea31D88
- Molecule
- Pre-mRNA-processing ATP-dependent RNA helicase PRP5
- UniProt
- Q4PFD9
- Pockets
- 14 · best druggability 0.68
Structure
1 distinct chain · 38% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pre-mRNA-processing ATP-dependent RNA helicase PRP5 | protein | 1156 | 38% helix, 8% strand | Q4PFD9 |
Pockets
14 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 322 | 0.68 | 0.82 | 44 | empty |
| 2 | 505 | 0.63 | 0.76 | 61 | empty |
| 3 | 233 | 0.54 | 0.77 | 20 | empty |
| 4 | 100 | 0.43 | 0.78 | 16 | empty |
| 5 | 81 | 0.36 | 0.76 | 14 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q4PFD9
- Elsewhere: UniProt Q4PFD9 · AlphaFold DB Q4PFD9
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