Research workbench
AlphaFold monomer V2.0 prediction for pre-mRNA-processing factor 17 (O43071)
Analyse AlphaFold monomer V2.0 prediction for pre-mRNA-processing factor 17 (O43071) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- O43071
- Type
- protein
- Length
- 558 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x609Fa0b31fD3638CAd281535556e05E61e7eC0f8
- Molecule
- Pre-mRNA-processing factor 17
- UniProt
- O43071
- Pockets
- 5 · best druggability 0.81
Structure
1 distinct chain · 9% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pre-mRNA-processing factor 17 | protein | 558 | 9% helix, 30% strand | O43071 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 774 | 0.81 | 0.85 | 51 | empty |
| 2 | 125 | 0.47 | 0.78 | 21 | empty |
| 3 | 111 | 0.43 | 0.77 | 18 | empty |
| 4 | 132 | 0.37 | 0.73 | 21 | empty |
| 5 | 59 | 0.25 | 0.72 | 14 | empty |
Compared structures
- 9ESI · Structure of a B-state intermediate committed to discard (Bd-II state) · an experimental structure of the same protein · chain A against a, TM-score 0.18
- 3JB9 · Cryo-EM structure of the yeast spliceosome at 3.6 angstrom resolution · an experimental structure of the same protein · chain A against g, TM-score 0.18
- 3JB9 · Cryo-EM structure of the yeast spliceosome at 3.6 ångström resolution · an experimental structure of the same protein · chain A against g, TM-score 0.18
- 9ESH · Structure of a B-state intermediate committed to discard (Bd-I state) · an experimental structure of the same protein · chain A against a, TM-score 0.18
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O43071
- Elsewhere: UniProt O43071 · AlphaFold DB O43071
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