Research workbench
AlphaFold monomer V2.0 prediction for polyphosphate kinase (B1YMX3)
Analyse AlphaFold monomer V2.0 prediction for polyphosphate kinase (B1YMX3) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- B1YMX3
- Type
- protein
- Length
- 687 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x1ED4a68B4011314730adE976b56Ad4cA21b54dcD
- Molecule
- Polyphosphate kinase
- UniProt
- B1YMX3
- Pockets
- 9 · best druggability 0.81
Structure
1 distinct chain · 41% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Polyphosphate kinase | protein | 687 | 41% helix, 24% strand | B1YMX3 |
Pockets
9 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1041 | 0.81 | 0.82 | 103 | empty |
| 2 | 188 | 0.56 | 0.80 | 30 | empty |
| 3 | 134 | 0.52 | 0.81 | 25 | empty |
| 4 | 84 | 0.46 | 0.81 | 19 | empty |
| 5 | 56 | 0.45 | 0.84 | 19 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B1YMX3
- Elsewhere: UniProt B1YMX3 · AlphaFold DB B1YMX3
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