Research workbench
AlphaFold monomer V2.0 prediction for pentatricopeptide repeat- containing protein PNM1, mitochondrial (Q9FME4)
Analyse AlphaFold monomer V2.0 prediction for pentatricopeptide repeat- containing… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9FME4
- Type
- protein
- Length
- 521 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x4Ef77Afb5a3D9F41c95Be3227D1CC986CCb61835
- Molecule
- Pentatricopeptide repeat-containing protein PNM1, mitochondrial
- UniProt
- Q9FME4
- Pockets
- 6 · best druggability 0.60
Structure
1 distinct chain · 63% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pentatricopeptide repeat-containing protein PNM1, mitochondrial | protein | 521 | 63% helix, 0% strand | Q9FME4 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 429 | 0.60 | 0.75 | 45 | empty |
| 2 | 98 | 0.56 | 0.85 | 19 | empty |
| 3 | 234 | 0.49 | 0.74 | 23 | empty |
| 4 | 88 | 0.46 | 0.80 | 17 | empty |
| 5 | 76 | 0.41 | 0.79 | 14 | empty |
Compared structures
- 6XYW · Structure of the plant mitochondrial ribosome · an experimental structure of the same protein · chain A against AQ, TM-score 0.65
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9FME4
- Elsewhere: UniProt Q9FME4 · AlphaFold DB Q9FME4
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