Research workbench
AlphaFold monomer V2.0 prediction for pentatricopeptide repeat- containing protein AT5G48910 (Q9FI80)
Analyse AlphaFold monomer V2.0 prediction for pentatricopeptide repeat- containing… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9FI80
- Type
- protein
- Length
- 646 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x9188600a0FCa2914254C94299b1bd9721Bc4D500
- Molecule
- Pentatricopeptide repeat-containing protein AT5G48910
- UniProt
- Q9FI80
- Pockets
- 5 · best druggability 0.78
Structure
1 distinct chain · 65% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pentatricopeptide repeat-containing protein AT5G48910 | protein | 646 | 65% helix, 4% strand | Q9FI80 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1125 | 0.78 | 0.80 | 87 | empty |
| 2 | 54 | 0.53 | 0.88 | 22 | empty |
| 3 | 167 | 0.43 | 0.74 | 28 | empty |
| 4 | 59 | 0.42 | 0.81 | 13 | empty |
| 5 | 81 | 0.40 | 0.78 | 13 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9FI80
- Elsewhere: UniProt Q9FI80 · AlphaFold DB Q9FI80
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