Research workbench
AlphaFold monomer V2.0 prediction for pentatricopeptide repeat- containing protein AT2G25580 (Q680H3)
Analyse AlphaFold monomer V2.0 prediction for pentatricopeptide repeat- containing… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q680H3
- Type
- protein
- Length
- 615 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x1B9Be4d3bCB04cc5b127c63c2Fbac7783eAB9839
- Molecule
- Pentatricopeptide repeat-containing protein AT2G25580
- UniProt
- Q680H3
- Pockets
- 5 · best druggability 0.76
Structure
1 distinct chain · 55% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pentatricopeptide repeat-containing protein AT2G25580 | protein | 615 | 55% helix, 3% strand | Q680H3 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1102 | 0.76 | 0.78 | 89 | empty |
| 2 | 1192 | 0.74 | 0.77 | 95 | empty |
| 3 | 159 | 0.49 | 0.78 | 23 | empty |
| 4 | 71 | 0.43 | 0.80 | 23 | empty |
| 5 | 62 | 0.33 | 0.76 | 14 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q680H3
- Elsewhere: UniProt Q680H3 · AlphaFold DB Q680H3
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